The backhead fittings' presence should not affect an air-test of the engine itself.
Your description and Bob's reply suggests to me that either the regulator is not opening for some reason, or its outlet pipe is choked somehow.
So what might cause these?
A small pipe and its connections might be bunged up with silver-solder or flux, or passages drilled to meet might not quite do so,. but there are two other possibilities.
One is drawing error. The other, erecting-shop error.
I am not trying to be facetious or denigrate your craftsmanship as even the most experienced builder can do this… Make an assembly mistake so simple he cannot think it possible, reinforced by friends all sagely saying, "No, he'd never do owt so daft!" Consequently the problem seems to magnify itself and become even more difficult to solve. I have been caught out many times by such things, though I don't claim Gold Medal quality! For example…..
My club built a loco that refused to run on air for months until by sheer fluke someone not directly involved in building the motion-work originally set out to repair a tiny exhaust-branch leak caused by slight over-drilling, hence discover a gasket had been made and fitted with no hole through it. Yet the builders were all consummate craftsmen too skilled to do something like that! After plugging the drilling the LBSC way, it took a bit of oiled paper and ten minutes' work to make engine run, on air, just as it should.
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So use the symptoms….
Air through the superheater works. Air through the boiler hence regulator does not.
Is this model's regulator in the dome as prototype, or a smokebox type?
With the superheater still disconnected but the rest of the boiler all fitted up, put some air at low pressure in the boiler, then open the regulator slowly to verify air emerges at the header.
It does? Perhaps the regulator is not opening sufficiently for the engine to work, or something is partially choked.
Remove the dome or regulator cover (according to type); lubricate it with a spot of steam-oil or water to avoid scratching the sealing-faces, and operate it from the handle in the cab, to see if it actuates from fully-closed to fully open, as intended. Small dimension errors might have a significant effect here.
It does that?
Suspect a blocked pipe, or something like a passage or gasket not quite as it should be. The pipe from a dome-mounted regulator to the header is usually straight once past the elbow formed by the regulator body. Remove or lift the valve itself. A bright light shone through from header to regulator may be discernible by looking into the valve body. Or gently push a piece of stiff insulated wire (e.g. a bit of low-power mains-cable) through to see if it meets the regulator. Or try blowing through a length of polythene tube on the header end.
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These tests should show what is wrong, and you can then work out how to put it right.
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The loco I mentioned above had the opposite fault!. The regulator worked twice – on its first public operation too – then refused to close! It is the rotary disc type in the dome. The regulator body proved very slightly out of true, preventing the disc from seating correctly.