I still don't really get why if a bearing is made to the spindle it will be used with it needs "scraping in".
This is an easy one. Precision and longevity. Replacement bearings may need to accommodate less than perfect shafts. Can you guarantee your shaft to the n th degree? Mass produced shafts, mass produced bearings over umpteen batches over many years of production – some may match.but likely not all. Particularly replacement bearings, where wear has obviously taken its toll on the original bearing (which may have been changed previously.
Even with automotive engines, parts are chosen to match. Pistons (weight , for balance), bores (different ‘grades’ of pistons fitted), piston protrusion (different head gasket thickness for compression and/or not contact when running), bearing shells (particularly for competition engines), valve seat inserts (for correct valve recession) just as obvious examples.
Regarding running in – some items, in the past were ‘run in’ by tightening the bearing caps to such an extent that the bearing surfaces almost melted – then clearance shims were fitted. Those bearings were most certainly ‘relieved’ on the sides to allow lubricant to be picked up as the shaft rotated. Likely lightly scraped to provide oil capture/retention, too.
These processes were clearly needed and understood by both the manufacturers and the engineers of the day. Most motor mechanics became just that – mechanics, not engineers.
Although the average engine may only need a fitter to change service items, the engineering (to allow that) has progressed to that point over many years.
How many physically diagnose a problem these days? Not many. Fitters, to simply substitute old parts with new items, are cheaper than proper engineers. Most modern vehicles use computers to diagnose faults, so technicians can just look up any ‘fault codes’ and fitters can then substitute parts required. Good, but only to a certain point.
Think here of something like F1 technology levels where sensors, transmission and data processors are of paramount importance for absolute optimal performance of the unit for its short lifespan under very arduous conditions of operation. Your lathe is unlikely to perform to the same exacting standard as a F1 engine!