Neil
Although the often advocated "push a centre in" alignment method frequently works its bad practice and should never be used save perhaps as a quick and dirty way of rough setting. I often use it so as a first step when setting things up in a four jaw on the lathe. Not only is it insufficiently robust but it also relies on perpendicular line contact between unmatched surfaces which are not inherently defined for such purposes during manufacture.
If you want to align something you have to use properly defined axes either directly parallel to the desired axis or, as with a taper, explicitly designed and accurately made with respect to that axis. Dropping a centre down relies on a clean, round edge or accurate chamfer on the table and a centre accurately ground right out to its shank or taper junction. Rotary tables normally have a chamfer or tapered edge to the central bore to protect it which is normally "just made" rather than accurately specified. Manufacturing methods ensure that it should be close but there is no tellings exactly where the centre will touch.
Given how little trouble it is to make a proper MT alignment spigot its silly to rely on a potentially iffy method. Even it it almost always works. The almost bit is guaranteed to turn up at the most inconvenient time when a mistake is most irretrievable!
Clive
Who isn't paranoid. The shop gremlins. Lawyer Murphy and the Custard Pie God really are out to get him at every opportunity!