I'm back into pendulums too, having fitted a new one to my experiment clock after a long delay. Another story!
Putting pennies on top of a bob isn't done to alter the weight – weight doesn't effect period. The timing of a pendulum depends on the rod's length, and the rod ends at the centre of mass inside the bob, not at the top of the bob. Adding pennies to the top of the bob lifts its centre of mass, effectively shortening the rod so the pendulum swings faster. Adding pennies to a shelf suspended underneath the bob would drop its centre of mass and the pendulum would slow down.
I guess old pennies are used because they're flat discs of a stable metal of about the right size and weight, that are unlikely to fall off! They should send it back, buying a new clock I'd expect it to come with a set of special weights lovingly finished by time-served master-craftsmen, costing only 50 Guineas each…
Dave