Sorry – I'm not quite clear what you mean.
Is this a function that generates countersunk or plain, threaded holes them? (Presumably you need enter the thread size and maximum depth.)
I am not sure why "rarely" wanted either. Machines are full of plain and threaded holes! In both TurboCAD and manual drawing I have never found it necessary to draw the thread, only to represent the hole as a circle or rectangle (an ellipse in an oblique, 3D view), depending on view type, annotated with its details.
The depth of a blind hole is important of course, but the diameter should be a function of the necessary strength – or perhaps of scale. So if it seems to me necessary to reduce it so the hole will not break through, I would want to know why. Have I over-estimated the bolt size for the part, for example, or left insufficient material by depth or breadth for the correct diameter?
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I don't know Fusion, though I did briefly try it, so I can't follow exactly your comparison, but to me it looks no more or less work than the way I was using TurboCAD to draw the same thing. It does the same thing but in a slightly different way. There is though the crucial point about TC might or might not that differ from other CAD systems, that it has more than one internal method to generate a solid figure like a cylinder, and this gives the figures their own peculiar reactions to the various controls and commands.
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I'll pass on Fusion muddling nouns and verbs, but I agree wholeheartedly with your point about naming part drawing should be natural to all filing-systems, be they electronic or paper. The modern computer allows long enough names for that. I recall one of the laboratory computers being so full of old and really, temporary, test-results no-one had really logged, that I called it "Garden Shed Computing".
Meaning the stereotypical shed: so full of old tins of dried-up paint, out-grown toys, corroded barbeques and such like there is barely room for a new garden spade. So buy a new, bigger shed….
You can work only to Part Numbers, perhaps with vague generic titles like "Bearing" or "Cover"; and this is typical industrially, not least for confidentiality when sub-contracting component manufacture. However it does need quite a lot of self-discipline to maintain such a system for oneself in a hobby, because it needs you also to compile and maintain a coherent index (on the PC or in a note-book).
I used somewhat similar to help in preparing one project: a spreadsheet version of the parts-list on the drawings, extended to group the materials, fastenings and similar machining operations. E.g. find the material for all the parts turned from one-inch diameter steel, and concentrate on just the turning of all those parts. Leave any second-operations until the turning is complete; and group those with related second operations on parts turned from other diameters. (Why set up a rotary table or angle-vice, say, twice?)
Now that is a planning not design approach, so the medium used for the drawings does not matter (in that case, it the old Blackgates-published prints for a Stent T&C grinder). However, I gather some CAD systems have some form of planning functions, although I do not know them.