I had a similar problem many years ago when I first had my Emco F3. My solution was to cut holes in the floor using a hole saw at the machine hold down bolt locations. The concrete beneath was drilled to take an M10 Rawl bolt anchor. Studding of the correct length was then inserted and a large nut and washer tightened onto the concrete. Using a couple of layers of damp proof membrane between the concrete and the washer, and being sufficiently large enough for what comes next.
A piece of steel tube was then inserted into the hole in the floor and level with the floor surface. This was filled with some concrete and troweled flat. Silicone sealant around the tube floor joint made everything neat and tidy.
Due time was allowed for the concrete to cure and then the machine was installed and levelled.
When I moved from the shed into my current workshop, the steel tubes were rotated using a chain pipe wrench and this undid the nuts, with hindsight I would use wing nuts now. After removing the steel concrete distance pieces, and tapping the M10 anchors after inserting a bolt, this allowed the Rawl bolt anchor to be removed and the holes were then filled with some grout mix.
Regards
Gray,