Also the helix extrude and cut functions can be a little tricky and are less than intuitive – essentially, you need to create a scaled sketch of the profile to be extruded or cut, located where the extrude or cut will be — then with it selected, select the plane, height and pitch, then apply. There are a couple youtube videos out there that show the basics.
You might want to create a dummy part or two and play with it until you are familiar with how it works. Once you get the hang of it, it's not all that difficult.
If you don't need to show a real thread, you can use the "note" function on your 2D drawing to show specifics, as threads and hole call outs are not currently supported in Atom3D.
Tim