Ian
Yes, it was fine. I made sure the section I removed didn't contain the index mark(!), scored the glass with a new carbide insert and snapped it over a cloth covered edge. The Chinese operative who assembled it had thoughtfully left his/her finger prints all over it and I cleaned these off before reassembling it. The glass is held into the extruded channel by several soft plastic slugs, so refitting it was simple.
The trickiest part was actually drilling the 4 holes on the end of the shortened housing that hold the end cap in place. The bogey is guided by something like 5 or 7 miniature ball bearings, biased against the glass by a spring. You can just about make that out in one of the photos.
Unless you are dismantling a full length scale (60-80cm), it's pretty low risk. Mine started out something like 30 cm long and I removed a couple of inches so it was an exact fit for the BP head. It's now sufficiently compact that I will be able to leave it in place when I install the CNC conversion parts, although arguably it would become redundant at that point.
Unless I ever try boring a cylinder block, I'll probably (almost) never use the knee scale, personally. Having said that, I may be fitting a spare power feed to the Z-axis knee at some point in which case you never know, I may make more use of it. Most of my precision (=DRO) work is within the 5" range of the quill.
Murray