If using a Milling machine to drill the holes, position the first hole, and centre drill, and then gradually increase the drill size up to 9/16″. FWIW I would use a 35/64″ as the last drill before the 9/16″
In this way, the cutting forces are reduced, and with it, the tendency to swing off centre.
Then reposition the work, using co ordinates, to place for the next hole, and repeat the centre drill, pilot drills, finishing drill sequence for each hole, before moving to the subsequent holes.
Accuracy of hole size will depend on how accurately the drill has been ground.
If the lips are unequal lengths, no matter how the drill has been ground, you will get an oversize hole.
Properly ground four facet drills are superior to jobber drills, for accuracy, IMO
Howard