The crystals come flat, with the OD slightly larger than the hole they fit into in the bezel. You then have to press them in using a domed former. The trick is getting the crystal just the right amount oversize and also in most cases the OD needs a chamfer so it grips in the groove in the bezel.
You can use the tailstock of the lathe to press the crystal into the bezel held in the chuck, with suitable domed former held in the tailstock chuck or taper. Watchmakers use a handy dandy little hand press to do the same.
Best source of info and parts I know on this stuff is here at Long Island Indicator Service LINK
Fitting a crystal page is here LINK