I can’t be certain, but one way that the count for holes can report higher than the actual number is if there was an error in the production of the CAD model. I’ve see both of the following happen;
- hole accidentally placed twice at the same spot (the system still counts 2 holes)
- an extra hole placed ‘out in space’ away from the model (perhaps an accidental extra click)
On several occasions I’ve handled reports of the CAD system getting the numbers wrong in the automatic hole callout, so far the error has always been on the part of CAD operator. These things can be very tricky to find.