For just a few screws, in 6BA a Junior hacksaw and careful cleaning up of the end with a file, will do quite nicely.
If you think that you may have to shorten a lot of other screws, in the future, consider making a John Ashton Screw Modification Fixture.
(He won the John Stevenson Memorial Cup a few years ago for it)
The time making it will be well spent! I have a box with about a dozen holders for threads from 8-32 UNC up to M8. Saves me a lot of time and allows screws to be shortened, chamfered or domed quite neatly.
Howard