As a non motor cyclist, two thoughts come to mind, ,for a reasonably but not thorough fix.
1. Use a fine diamond file to remove any bruises standing proud of the taper.
2. Lap the flywheel to the crakshaft using fine valve grinding paste. CLEAN thoroughly afterwards!
This should make the tapers a close match (Obviusly not where the shaft or flywheel are gooved)
If the tapers are a good match, you won’t need Loctite to keep them togather. You might have problems getting them apart later. (Based on my experience of Vauxhall and Ford brake driums/hubs on halfshaft tapers!)
One of my testers on Air Sea Rescue Launches, removed the key, and lapped the propellor to the taper of the shaft. His boat never broke a propellor shaft, nor lost a propellor, if that is any thing to judge by!
Howard