A taper could stem from a huge variety of causes.
Your question immediately raise a number of others in the search for a solution, so a lot more information is required..
Even you checking methods need to be examined closely. (Are the measurements consistent and repeatable. If not the figures are not worth much.
1.How accurate is the bar that you use to check alignment?
2. As already said, the bed could be twisted. If it is, the cut bis likely to be tapered.
3. How is the chuck fitted to the spindle? Screw on or Flange fitting?
4. Are the mating faces between chuck and spindle clean, and free from burrs?
ANY dirt or damage will throw out alignment.
5. is the chuck a close fit on the register / flange / face of the flange?
If the fit is not tight, misalignment will be present, and possibly inconsistent.
6. Has work held in the chuck been checked for run out close to the jaws and at a distance, say 100 mm away? Bear in mind that a perfectly round bar held in the jaws of a 3 jaw chuck will exhibit r eccentricity. A 3 jaw chuck holding work absolutely true is VERY rare.
7. Has the alignment been checked between a centre in the Headstock and one in the tailstock?
8. IF the alignment fo Headstock and Tailstock centres appears to be satisfactory, has it been checked with a properly centred Alignment bar?
You sound as if you need face to face / hands on assistance.
Where are you located?
What brand and model is your lathe?
Answering all these questions will give a better chance of finding a solution to the problem.
Howard