Inspired by an article in MEW, a long time ago, I made up a vice alignment fixture, looking like a set of goal posts.
It was made from 1 inch round bar (25mm for those who are Metric).
The foot of each upright is turned to be a tight fit in the Tee slots of the table.
Each upright is drilled through to take a long bolt (more convenient than a stud) that picks up on the Tee nut in the slot.
The "crossbar" is secured to the uprights, by socket head screws, at a height that matches the vice jaws, and located to the uprights by a vee in one or the other.
The fixture is clamped to the milling table and a light cut taken along both sides, to produce a flat about 3.8" (10mm) wide.
You then have faces that are on the travel line of the cutter, even if the tee slots are not.
The vice is placed on the table, in the required position, but not clamped down, yet. The "goal post" fixture is placed within the opened jaws of the vice, and clamped down to the table. The vice jaws are then closed, firmly upon the fixture, before being clamped to the table. The vice can then be released, and the "goalpost" fixture removed and stored for the next time that it is needed. My checks usually show the vice jaws to be aligned within 0.001inch, (0.0025mm).
H T H
Howard