If you are going to stick with manual marking out then best get the right tools, a pair of dividers is what's needed to mark out not callipers be they firm leg or digital.
I suggest you tackle the Front (top) cover first as that is less critical than the back (lower) one. And go about it like this
1. Blue the face that mates to the cylinder, this means any scribed lines won't be seen.
2. Put cover blued side out in the 3-jaw and using a ctr or spotting drill put a small dimple in the middle. Remove from lathe
3. Set dividers to 9/16" (half PCD) and use them to scribe a circle using the just drilled ctr hole to locate one leg, When setting don't do it from the end of the rule, locate one leg in the 1" engraved line of the rule and then set the other leg to the 1 9/16" position.
4. Take a dot punch and make a small dimple with that somewhere on the scribed 1 1/8" circle, inspect with magnifying glass and adjust if needed.
5. Set dividers to just under 17mm and then with one leg in the punch mark scribe two arcs one either side, now move divider to where the arcs cross the PCD circle and strike another two arcs. Then move again and strike an arc that should cross the PCD circle at the same point as the last arc, if not adjust dividers and repeat until you have 5 equally spaced arcs.
6. Dot Punch the remaining 4 hole positions, check with glass and then go round with centre punch to make a deeper mark.
7. Drill all 5 holes tapping size.
8 Locate cover on correct end of cylinder, lining up the holes so two are parallel to port face and clamp in position.
9. Hold clamped parts in mill or drill and drill one tapping size hole into cylinder using the cover to guide it's position.
10. Mark cover so you know which way to put it back on then unclamp from cylinder and enlarge the hole you just used as a guide to clearance size.
11. Tap hole in cylinder, preferably using some form of tapping guide or guide with the drill/mill.
12. Use one of the supplied screws to fix cover back onto cylinder and then repeat drilling, enlarging and tapping sequence for each of the remaining holes.